Petrov Lab Blog

The news from the Petrov Lab at Stanford University and the blog posts by the members of the lab.

Monday, December 5, 2011

Balancing selection as the natural outcome of adaptation

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Balancing selection is often presented in opposition to directional selection. Indeed, balancing selection promotes maintenance of ge...
Monday, August 1, 2011

Faster than neutral evolution of constrained sequences

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One of the key insights from the neutral theory of molecular evolution is that functional sequences should generally evolve slower than ...
Monday, July 18, 2011

High rate of false positives in the estimates of positive selection due to faulty alignments

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In a paper published in Genome Research , Penka Markova (who successfully graduated this year) and Dmitri, continue to shine light on th...
Saturday, April 23, 2011

Population Genomics of Transposable Elements in Drosophila

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Transposable elements (TEs) are the primary contributors to the genome bulk in many organisms and are major players in genome evolution. ...
Saturday, April 9, 2011

Ruth Hershberg accepts a tenure track faculty position offer from Technion

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We are very happy to announce that Ruth Hershberg has just accepted a tenure track position at the Ruth & Bruce Rappaport Faculty of ...
Saturday, March 26, 2011

T-lex: automatic assessment of the presence of individual transposable elements using next generation sequence data

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Anna-Sophie Fiston-Lavier and Josefa González (with the participation of a summer student Matthew Carrigan and Dmitri) h...
Friday, February 25, 2011

Alan Bergland wins prestigious NIH postdoctoral fellowship

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Alan Bergland wins prestigious NIH postdoctoral fellowship Alan Bergland was just awarded an NIH NRSA postdoctoral fellowship to study the...
Tuesday, December 7, 2010

3rd Semiannual Bay Area Population Genomics Conference

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The schedule for BAPG III at Stanford is all set. This time and hopefully in the future BAPG is sponsored by the Ecology and Evolution Gro...
Saturday, December 4, 2010

Broker Genes in Human Disease

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Genes that underlie human disease are important subjects of systems biology research. In a paper just published in GBE by James Cai , Elh...
Saturday, October 2, 2010

Universal patterns of mutation

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Natural selection sorts through the variability generated by mutation and biases evolution toward fitter outcomes. Mutation, while general...
Thursday, August 19, 2010

Physics of Evolution

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Dmitri is going to present two lectures at the "Physics of Evolution" workshop at UC San Diego at the end of this month. The wo...
Thursday, July 29, 2010

James Cai is a new Assistant Professor at Texas A&M!

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We are very happy to announce that James Cai , a postdoctoral fellow in the lab, has accepted an offer for a tenure-track Assistant Profe...
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Tuesday, July 13, 2010

Every mutation, at every site, at any given time

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Adaptation in eukaryotes is often assumed to be limited by the waiting time for adaptive mutations. This is because effective population s...
Sunday, April 25, 2010

Nadia Singh is the newest Assistant Professor in the Genetics Department at NC State

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Nadia Singh , a former PhD student in the lab, has accepted an Assistant Professor position in the Genetics Department at the North Carolin...
Friday, April 9, 2010

Adaptation to temperate climates in Drosophila

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The potential of geographic studies of genetic variation for the understanding of adaptation has been recognized for some time. In Drosop...
Monday, March 1, 2010

Philip Bulterys is accepted to UCLA MD/PhD program!

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Philip Bulterys , a fourth-year undergraduate in the lab, was just accepted into the extremely prestigious UCLA MD/PhD program (MSTP) . ...
Wednesday, February 17, 2010

Fabian Staubach is joining our lab in May 2010!

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Fabian Staubach from the Max Planck Institute for Evolutionary Biology is joining our lab in May 2010! During his Ph.D. research he work...
Monday, February 1, 2010

Second Bay Area Population Genomics Conference

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On the heels of the success of the first Bay Area Population Genomics Conference at Stanford in the Fall 0f 2009 we are planning the s...
Wednesday, January 13, 2010

Alan Bergland is joining the lab

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We are excited that Alan Bergland from Brown University has decided to join our lab! Alan is currently finishing up his Ph.D. research ( h...
Monday, October 26, 2009

First Bay Area Population Genomics Conference

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We just hosted the first Bay Area Population Genomics Conference at Stanford. Students and faculty from Stanford, Berkeley, UCSF, and UC ...
Wednesday, October 7, 2009

"Great fleas have little fleas upon their backs to bite 'em, and little fleas have lesser fleas, and so ad infinitum"

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Transposable Elements (TEs) are fragments of DNA that can jump from one genome position to another producing extra copies of themselves in ...

Graduate School Applications are due December 1, 2009

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If you are intetested in joining our lab as a graduate student, the deadline for applications is December 1. The Graduate Bioscience Admiss...
Friday, August 21, 2009

Papers from the lab are getting noticed

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First, Nature Review Genetics highlighted Ruth Hershberg's PLoS Genetics paper . And then Genetics published a paper by Philipp Messe...

Estimating mutational rates and patterns from new genomic data

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Mutations are the foundation of genetic diversity, yet we remain uncertain about their rates and patterns. This is because new mutations a...
Thursday, August 13, 2009

Yuan Zhu joins the lab

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Yuan Zhu , a second year graduate student from Genetics, is done with her rotations and has decided to join our lab. In her rotation proj...
Tuesday, July 14, 2009

Global rules for optimal codon choice

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In many genomes, presence of some codons in the gene improves the rate and the accuracy of protein translation compared to other synonymo...
Wednesday, July 1, 2009

The role of transposable elements in evolution

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Transposable elements (TEs) are short DNA sequences that can jump around the genome creating new copies of themselves. All this jumping cr...
Thursday, June 25, 2009

New Lab Baby

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Anna-sophie Fiston-Lavier and Cyril Lavier are happy and proud to announce the birth of their son, Eshan Lavier, born on Wednesday, May 1...
Monday, June 8, 2009

Drosophila genome under selection

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Over the past four decades, the predominant view of molecular evolution saw little connection between natural selection and genome evoluti...
Thursday, May 28, 2009

Young human disease genes evolve slowly

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Genes underlying human heritable diseases are not only important for medicine but are also of great interest for evolutionary biologists. ...
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Contributors

  • Anna
  • Diamantis
  • Josefa Gonzalez
  • Nandita
  • Naupaka
  • Petrov Lab
  • jamescai
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